PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Aqcoe3G016900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; stem eudicotyledons; Ranunculales; Ranunculaceae; Thalictroideae; Aquilegia
Family bHLH
Protein Properties Length: 329aa    MW: 36507.6 Da    PI: 6.2899
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Aqcoe3G016900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.37.6e-10240283755
                        HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++ ++RR+ri +++  L++l+P+       K++ +++LekA+ Y+k Lq
  Aqcoe3G016900.1.p 240 IAAKNRRERISERLKILQDLVPNG-----SKVDLVTMLEKAISYVKFLQ 283
                        5679*******************5.....5******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.351233282IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-12234291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.28E-11235287No hitNo description
SuperFamilySSF474591.83E-13237293IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.8E-12239288IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.9E-7240283IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048766Biological Processroot hair initiation
GO:0005739Cellular Componentmitochondrion
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MALAKERSAQ DSHMNLLYYG TVQESQNNSS LVGLLGFENY HKMMVDGGGS ERLPPLSDPN  60
ENGIMFGDLI NSQPEDAQIV IDFKTAGCNN VVHHSFGPLL SFEQGGDVTR NSCGSKVRHD  120
EDNSVWRNHV MDQSYPWNQV SSNRRNESRP SEDLNCFETA SSSNYPTVKD NQLVDEGMGW  180
FYSDGGATEG FEDQSTCSET NSHNKRPHMG SEMQCRKKHV ADGSRKNKLK IIPSKDPQSI  240
AAKNRRERIS ERLKILQDLV PNGSKVDLVT MLEKAISYVK FLQLQVKVLA TDEFWPAQGG  300
KAPEVSQVKE AIDAILSSHH KDRTSGSS*
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007033052.12e-85Rhd six-like 1, putative
TrEMBLA0A061EH342e-85A0A061EH34_THECC; Rhd six-like 1, putative
STRINGVIT_14s0006g01470.t011e-83(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66470.15e-58ROOT HAIR DEFECTIVE6